Laboratório de Regulação e Expressão Gênica

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Publicações – Laboratório de Regulação e Expressão Gênica

Publicações

  • Pinto, O. H. B., Biazotti, B. B., de Souza, R. S. C., Yassitepe, J. É. de C. T., Arruda, P., Dante, R. A., & Gerhardt, I. R. (2025). Seasonal bacterial profiles of Vellozia with distinct drought adaptations in the megadiverse campos rupestres. Scientific Data, 12(1), 636. https://doi.org/10.1038/s41597-025-04984-z
  • Pereira, H. D., Nonato, J. V. A., Duarte, R. C. R. M., Gerhardt, I. R., Dante, R. A., Arruda, P., & Yassitepe, J. E. de C. T. (2025). Temporal field phenomics of transgenic maize events subjected to drought stress: Cross‐validation scenarios and machine learning models. The Plant Phenome Journal, 8(1). https://doi.org/10.1002/ppj2.70015
  • Braz, G. T., Riboldi, L. B., Pinto, M. S., Forni-Martins, E. R., Yassitepe, J. E. C. T., Dante, R. A., & Gerhardt, I. R. (2024). Revisiting the cytogenetics of Vellozia Vand.: immunolocalization of KNL1 elucidates the chromosome number for the genus. Brazilian Journal of Botany, 48(1), 6. https://doi.org/10.1007/s40415-024-01064-1
  • Souza, K. X. S. de, Bolfe, É. L., Leite, M. A. de A., Bambini, M. D., Visoli, M. C., Luchiari Júnior, A., da Silva, F. R., Esquerdo, J. C. D. M., & Yassitepe, J. E. de C. T. (2024). Quantum computing: current and potential applications in digital agriculture. Pesquisa Agropecuária Brasileira, 59. https://doi.org/10.1590/s1678-3921.pab2024.v59.03753
  • Koltun, A., Alves Da Silva, P., Torres, I. Y., Bonifácio-Anacleto, F., Erika De Carvalho, J., & Yassitepe, T. (n.d.). Microsatellite markers in maize: challenges and guidelines for implementing multiplex SSR analyses Microsatellite markers in maize: challenges and guidelines for implementing multiplex SSR analyses . Crop Breeding and Applied Biotechnology, 24(1), 2024. https://doi.org/10.1590/1984
  • Hernandes-Lopes, J., Pinto, M. S., Vieira, L. R., Monteiro, P. B., Gerasimova, S. V., Nonato, J. V. A., Bruno, M. H. F., Vikhorev, A., Rausch-Fernandes, F., Gerhardt, I. R., Pauwels, L., Arruda, P., Dante, R. A., & Yassitepe, J. E. de C. T. (2023). Enabling genome editing in tropical maize lines through an improved, morphogenic regulator-assisted transformation protocol. Frontiers in Genome Editing, 5. https://doi.org/10.3389/fgeed.2023.1241035
  • Costa, F. de F., Souza, R. S. C. de, Voidaleski, M. F., Gomes, R. R., Reis, G. F., Lima, B. J. F. de S., Candido, G. Z., Geraldo, M. R., Soares, J. M. B., Schneider, G. X., Trindade, E. da S., Bini, I. H., Moreno, L. F., Bombassaro, A., Queiroz-Telles, F., Raittz, R. T., Quan, Y., Arruda, P., Attili-Angelis, D., … Vicente, V. A. (2023). Sugarcane: an unexpected habitat for black yeasts in Chaetothyriales. IMA Fungus, 14(1), 20. https://doi.org/10.1186/s43008-023-00124-7
  • Fuchs, P., Feixes-Prats, E., Arruda, P., Feitosa-Araújo, E., Fernie, A. R., Grefen, C., Lichtenauer, S., Linka, N., de Godoy Maia, I., Meyer, A. J., Schilasky, S., Sweetlove, L. J., Wege, S., Weber, A. P. M., Millar, A. H., Keech, O., Florez-Sarasa, I., Barreto, P., & Schwarzländer, M. (2023). PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 2 localizes to the Golgi. Plant Physiology. https://doi.org/10.1093/plphys/kiad540
  • Hernandes-Lopes, J., Yassitepe, J. E. de C. T., Koltun, A., Pauwels, L., Silva, V. C. H. da, Dante, R. A., Gerhardt, I. R., & Arruda, P. (2023). Genome editing in maize: Toward improving complex traits in a global crop. Genetics and Molecular Biology, 46(1 suppl 1). https://doi.org/10.1590/1678-4685-gmb-2022-0217
  • Ferrocino, I., Rantsiou, K., McClure, R., Kostic, T., de Souza, R. S. C., Lange, L., FitzGerald, J., Kriaa, A., Cotter, P., Maguin, E., Schelkle, B., Schloter, M., Berg, G., Sessitsch, A., & Cocolin, L. (2023). The need for an integrated multi‐OMICs approach in microbiome science in the food system. Comprehensive Reviews in Food Science and Food Safety. https://doi.org/10.1111/1541-4337.13103
  • Camargo, A. P., de Souza, R. S. C., Jose, J., Gerhardt, I. R., Dante, R. A., Mukherjee, S., Huntemann, M., Kyrpides, N. C., Carazzolle, M. F., & Arruda, P. (2022). Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME Journal. https://doi.org/10.1038/s41396-022-01345-1
  • Lange, L., Berg, G., Cernava, T., Champomier-Vergès, M.-C., Charles, T., Cocolin, L., Cotter, P., D’Hondt, K., Kostic, T., Maguin, E., Makhalanyane, T., Meisner, A., Ryan, M., Kiran, G. S., de Souza, R. S., Sanz, Y., Schloter, M., Smidt, H., Wakelin, S., & Sessitsch, A. (2022). Microbiome ethics, guiding principles for microbiome research, use and knowledge management. Environmental Microbiome, 17(1), 50. https://doi.org/10.1186/s40793-022-00444-y
  • Olmo, Rocío, Stefanie Urimare Wetzels, Jaderson Silveira Leite Armanhi, Paulo Arruda, Gabriele Berg, Tomislav Cernava, Paul D. Cotter, Solon Cordeiro Araujo, Rafael Soares Correa de Souza […], and Martin Wagner. 2022. “Microbiome Research as an Effective Driver of Success Stories in Agrifood Systems – A Selection of Case Studies.” Frontiers in Microbiology 13. doi: 10.3389/fmicb.2022.834622.
  • IG Maia, CE Benedetti, A Leite, SR Turcinelli, AE Vercesi, P Arruda (1998) AtPUMP: an Arabidopsis gene encoding a plant uncoupling mitochondrial protein. FEBS letters 429, 403-406. https://doi.org/10.1016/S0014-5793(98)00634-6
  • AJG Simpson, FC Reinach, P Arruda et al (2000) The genome sequence of the plant pathogen Xylella fastidiosa. Nature 406, 151
  • AL Vettore, FR da Silva, EL Kemper, …P Arruda (2003) Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane. Genome research 13, 2725-2735. https://doi.org/10.1038/35018003.
  • IAP Neshich, E Kiyota, P Arruda (2013) Genome-wide analysis of lysine catabolism in bacteria reveals new connections with osmotic stress resistance. The ISME journal 7, 2400. https://doi.org/10.1038/ismej.2013.123.
  • P Barreto, V Okura, IA Pena, R Maia, IG Maia, P Arruda (2015) Overexpression of mitochondrial uncoupling protein 1 (UCP1) induces a hypoxic response in Nicotiana tabacum leaves. Journal of Experimental Botany 67, 301-313. https://doi.org/10.1186/1471-2229-14-144
  • E Kiyota, IA Pena, P Arruda (2015) The saccharopine pathway in seed development and stress response of maize. Plant, Cell & Environment 38, 2450-2461.https://doi.org/10.1111/pce.12563.
  • RSC De Souza, VK Okura, JSL Armanhi, B Jorrín, N Lozano, MJ Da Silva, M González-Guerrero, LM Araújo, NC Verza, HC Bagheri, J Imperial, P Arruda (2016) Unlocking the bacterial and fungal communities’ assemblages of sugarcane microbiome. Scientific Reports 6, 28774. https://doi.org/10.1038/srep28774.
  • JSL Armanhi, RSC De Souza, LM De Araújo, VK Okura, P Mieczkowski, J Imperial, P Arruda (2016) Multiplex amplicon sequencing for microbe identification in community-based culture collections. Scientific Reports 6, 29543. https://doi.org/10.1038/srep29543.
  • JSL Armanhi, RSC de Souza, NB Damasceno, LM de Araújo, J Imperial, P Arruda (2018) A community-based culture collection for targeting novel plant growth-promoting bacteria from the sugarcane microbiome. Frontiers in Plant Science 8, 2191. https://doi.org/10.3389/fpls.2017.02191.
  • Barreto, Pedro, Charlene Dambire, Gunjan Sharma, Jorge Vicente, Rory Osborne, Juliana Yassitepe, Daniel J. Gibbs, Ivan G. Maia, Michael J. Holdsworth, and Paulo Arruda. 2022. Mitochondrial Retrograde Signaling through UCP1-Mediated Inhibition of the Plant Oxygen-Sensing Pathway. Current Biology 32 (6): 1403-1411.e4. https://doi.org/10.1016/j.cub.2022.01.037.